Timeline

Repo.Commit was a thin pass-through to manifest.Checkin: callers who supplied a subset of the parent's tracked files got a partial manifest, so files tracked at the parent silently disappeared from the new commit. A checkout at the child's rev saw only the supplied subset — bones, EdgeSync, and sesh all hit this as silent data loss across slot commits.

Default behavior now matches `fossil ci`: when ParentID > 0 the parent's F-cards are merged into the commit's file set (caller wins on name collision; untouched parent files are loaded by UUID and carried forward).

For the rare case where a caller intentionally wants omission to mean deletion, CommitOpts.PartialManifest opts out of the merge. The internal diff/deletion tests that previously relied on the partial behavior now set this flag explicitly. A first-class deletion API may replace the escape hatch later.

Adds TestCommitPreservesParentFiles as the regression: parent [a,b,c], child supplies only [b'], child's ListFiles must return [a,b',c] with a and c keeping the parent's blob UUIDs. check-in: 862dcb20c3 user: [email protected] tags: trunk, v0.6.2